Workstations
Workstations
Please request usage rights via PPMS request
Log in (remote and in person) at the workstations is only possible after booking a slot in the PPMS booking system.
Analyzer 1 Workstation (PCW-IMBA-116)
- Amira (connect via VNC - see Protocols)
- Arivis Vision 4D
- CaseViewer
- FIJI
- Imaris
- Imaris File Converter
- Imaris Stitcher
- Imaris Viewer
- Leica LAS X
- Olympus OlyVIA
- ZEN Black: advanced processing tools and 3D Lightsheet
- ZEN Blue: advanced processing tools and 3D Lightsheet
Analyzer 2 Workstation (PCW-IMBA-132)
- Case Viewer
- FIJI
- Ilastik
- Imaris
- Imaris File Converter
- Imaris Stitcher
- Imaris Viewer
- Leica LAS X
- Living Image
- Olympus OlyVIA
- ZEN Black: advanced processing tools and Airyscan, Airyscan Fast
- ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization
Analyzer 3 Workstation (pcw-imba-229)
- CaseViewer
- CellProfiler
- FACSDiva (connect via VNC - see Protocols)
- FIJI
- FlowJo (see below available Plugins)
- Ilastik
- Nutil
- Olympus OlyVIA
- QuickNII
- Spectroflo
- VisuAlign
- ZEN LITE (license free): just basic processing tools
- 3DSlicer
Analyzer 4 Workstation (pcw-imba-230)
- CaseViewer - with Marker Option
- FACSDiva (connect via VNC - see Protocols)
- FIJI
- Ilastik
- ModFit
- NovoCyte Express
- Olympus OlyVIA
- Spectroflo
- ZEN LITE (license free): just basic processing tools
Analyzer 5 Workstation (pcw-imp-193)
- CaseViewer
- FIJI
- Ilastik
- MitoSegNet (MitoA, MitoS)
- Nutil
- Olympus OlyVIA
- QuickNII
- ScanR Acquistion
- ScanR Analysis
- VisuAlign
- ZEN Blue: advanced processing tools and Airyscan
Analyzer 6 Workstation (pcw-imp-293)
- CaseViewer
- Ilastik
- Nutil
- QuickNII
- VisuAlign
- ZEN Black: Elyra package (PALM, SIM, SIM2)
GPU server 1 (biooptics-gpu-1.vbc.ac.at)
AIVIA
FIJI
Napari
Olympus OlyVIA
ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization
GPU server 2 (biooptics-gpu-2.vbc.ac.at)
FIJI
Huygens
Napari
Olympus OlyVIA
ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization
Virtual machines for FlowJo V10 and ForeCyt
flowjo-1.imp.ac.at - FlowJo, ForeCyt
flowjo-2.imp.ac.at - FlowJo, ForeCyt
flowjo-3.imp.ac.at - FlowJo, ForeCyt
flowjo-4.imp.ac.at - FlowJo, ForeCyt
flowjo-5.imp.ac.at - FlowJo, NovoCyte Express
Plugins available on all FlowJo installations: ClusterExplorer, DiVaTranslator, DownSample, FlowAI, FlowClean, FlowSOM, Hyperfinder, IndexSort, Phenograph
For additional Plugins - please contact BioOptics staff
How to access the virtual machines - pdf
How to connect remotely - pdf
How to setup a VNC connection - pdf
For heavy FlowJo users a few personalized licenses are available - please contact BioOptics staff for availability /waiting list options.