Workstations

Workstations

Usage rights of the workstations must be requested via the PPMS Booking System ("request training").

It is necessary to always book a slot in PPMS, it is not possible to use the workstation without reservation - PPMS will not allow to log-in.

Sign-Up is on a first come, first serve basis.

Please mind that some users use the workstation remotely, so never try to log-in to Windows without reservation, as this will terminate their work!

Analyzer 1 Workstation (PCW-IMBA-116)

  • Advanced renamer
  • Amira (connect via VNC - see Protocols)
  • CaseViewer
  • FIJI
  • Imaris
  • Imaris File Converter
  • Imaris Stitcher
  • Imaris Viewer
  • Jetraw
  • Leica LAS X
  • Olympus OlyVIA
  • picasso
  • ZEN Black
  • ZEN Blue

Analyzer 2 Workstation (PCW-IMBA-132)

  • Advanced renamer
  • Case Viewer
  • FIJI
  • Ilastik
  • Imaris File Converter
  • Imaris Viewer
  • Jetraw
  • Leica LAS X
  • Living Image
  • Olympus OlyVIA
  • picasso
  • ZEN Black Base
  • ZEN Blue

Analyzer 3 Workstation (pcw-imba-229)

  • CaseViewer
  • CellProfiler
  • FACSDiva (connect via VNC - see Protocols)
  • FIJI
  • FlowJo (see below available Plugins)
  • Ilastik
  • Jetraw
  • Living Image
  • Nutil
  • Olympus OlyVIA
  • QuickNII
  • RStudio
  • Spectroflo
  • VisuAlign
  • ZEN Blue (Lite)
  • 3DSlicer

Analyzer 4 Workstation (pcw-imba-230)

  • CaseViewer - with Marker Option
  • FACSDiva (connect via VNC - see Protocols)
  • FIJI
  • Ilastik
  • Jetraw
  • ModFit
  • NovoExpress
  • Olympus OlyVIA
  • Qupath
  • SpectroFlo

Analyzer 5 Workstation (pcw-imp-193)

  • CaseViewer
  • FIJI
  • Ilastik
  • MitoSegNet (MitoA, MitoS)
  • Nutil
  • Olympus OlyVIA
  • QuickNII
  • ScanR Acquistion
  • ScanR Analysis
  • VisuAlign
  • ZEN Blue: advanced processing tools and Airyscan

Analyzer 6 Workstation (pcw-imp-293)

  • Arivis Vision 4D
  • CaseViewer
  • Ilastik
  • Nutil
  • QuickNII
  • SymPhoTime 64
  • VisuAlign
  • ZEN Black: advanced processing tools and Airyscan, Airyscan Fast
  • ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization

GPU server 1 (biooptics-gpu-1.vbc.ac.at)

AIVIA

FIJI

Imaris File Converter

Napari

Olympus OlyVIA

ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization

GPU server 2 (biooptics-gpu-2.vbc.ac.at)

FIJI

Huygens

Napari

Olympus OlyVIA

Stitchy

ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization

 

 

Virtual machines for FlowJo V10 and ForeCyt

flowjo-1.imp.ac.at  - FlowJo, ForeCyt
flowjo-2.imp.ac.at  - FlowJo, ForeCyt
flowjo-3.imp.ac.at  - FlowJo, ForeCyt
flowjo-4.imp.ac.at  - FlowJo, ForeCyt
flowjo-5.imp.ac.at  - FlowJo, NovoCyte Express

Plugins available on all FlowJo installations: ClusterExplorer, DiVaTranslator, DownSample, FlowAI, FlowClean, FlowSOM, Hyperfinder, IndexSort, Phenograph

For additional Plugins - please contact BioOptics staff

How to connect remotely - pdf

How to setup a VNC connection - pdf

How to register for Flow Jo (Cloud license) - pdf