Workstations

can be booked via the PPMS booking system

Analyzer 1 Workstation (PCW-IMBA-116)

  • Amira (connect via VNC - see Protocols)
  • Arivis Vision 4D
  • CaseViewer
  • FIJI
  • Imaris - please book software and workstation separately via PPMS
  • Imaris File Converter
  • Imaris Stitcher
  • Imaris Viewer
  • Leica LAS X
  • ZEN Black: advanced processing tools and 3D Lightsheet
  • ZEN Blue: advanced processing tools and 3D Lightsheet

Analyzer 2 Workstation (PCW-IMBA-132)

  • Case Viewer
  • FIJI
  • Ilastik
  • Imaris - please book software and workstation separately via PPMS
  • Imaris File Converter
  • Imaris Stitcher
  • Imaris Viewer
  • Leica LAS X
  • Living Image
  • ZEN Black: advanced processing tools and Airyscan, Airyscan Fast
  • ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization

Analyzer 3 Workstation (pcw-imba-229)

  • CaseViewer
  • CellProfiler
  • FACSDiva (connect via VNC - see Protocols)
  • FIJI
  • FlowJo (see below available Plugins)
  • Ilastik
  • Spectroflo
  • ZEN LITE (license free): just basic processing tools

Analyzer 4 Workstation (pcw-imba-230)

  • CaseViewer - with Marker Option
  • FACSDiva (connect via VNC - see Protocols)
  • FIJI
  • Ilastik
  • ModFit
  • NovoCyte Express
  • Spectroflo
  • ZEN LITE (license free): just basic processing tools

Analyzer 5 Workstation (pcw-imp-193)

  • FIJI
  • ScanR Acquistion
  • ScanR Analysis
  • ZEN Blue: advanced processing tools and Airyscan
  • This workstation can be found in the small microscopy room IMP 2.020

GPU server 1 (biooptics-gpu-1.vbc.ac.at)

AIVIA

FIJI

Napari

ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization

GPU server 2 (biooptics-gpu-2.vbc.ac.at)

FIJI

Huygens

Napari

ZEN Blue: advanced processing tools and Airyscan, Physiology, Macro Environment, Colocalization

Virtual machines for FlowJo V10 and ForeCyt

flowjo-1.imp.ac.at  - FlowJo, ForeCyt
flowjo-2.imp.ac.at  - FlowJo, ForeCyt
flowjo-3.imp.ac.at  - FlowJo, ForeCyt
flowjo-4.imp.ac.at  - FlowJo, ForeCyt
flowjo-5.imp.ac.at  - FlowJo, NovoCyte Express

Plugins available on all FlowJo installations: ClusterExplorer, DiVaTranslator, DownSample, FlowAI, FlowClean, FlowSOM, Hyperfinder, IndexSort, Phenograph

For additional Plugins - please contact BioOptics staff

How to access the virtual machines - pdf

How to connect remotely - pdf

How to setup a VNC connection - pdf

For heavy FlowJo users a few personalized licenses are available - please contact BioOptics staff for availability /waiting list options.