Workstations

Workstations

Usage rights of the workstations must be requested via the PPMS Booking System ("request training").

It is necessary to always book a slot in PPMS, it is not possible to use the workstation without reservation - PPMS will not allow to log-in.

Sign-Up is on a first come, first serve basis.

Please mind that most user work on the workstations remotely, so never try to log into Windows without reservation, as this will terminate their work!

Analyzer 1 Workstation (pcw-imba-116)

  • Advanced renamer
  • Amira (connect via VNC - see Protocols)
  • CaseViewer
  • FIJI
  • Imaris
  • Imaris File Converter
  • Imaris Stitcher
  • Imaris Viewer
  • Jetraw
  • Leica LAS X
  • Olympus OlyVIA
  • picasso
  • ZEN Black - Elyra package (PALM, SIM, SIM2)
  • ZEN Blue - Molecular quantification toolkit (PALM, SIM, SIM2)

Analyzer 2 Workstation (pcw-imba-132)

  • Advanced renamer
  • Case Viewer
  • FIJI
  • Ilastik
  • Imaris File Converter
  • Imaris Viewer
  • Jetraw
  • Leica LAS X
  • Living Image
  • Olympus OlyVIA
  • picasso
  • ZEN Black - Base
  • ZEN Blue - Airyscan, Image Analysis, Developer Toolkit

Analyzer 3 Workstation (pcw-imba-229)

  • CaseViewer
  • CellProfiler
  • FACSDiva (connect via VNC - see Protocols)
  • FIJI
  • FlowJo (see below available Plugins)
  • Ilastik
  • Jetraw
  • Living Image
  • Nutil
  • Olympus OlyVIA
  • QuickNII
  • RStudio
  • Spectroflo
  • VisuAlign
  • ZEN Blue - Base
  • 3DSlicer

Analyzer 4 Workstation (pcw-imba-230)

  • CaseViewer - with Marker Option
  • FACSDiva (connect via VNC - see Protocols)
  • FIJI
  • Ilastik
  • Jetraw
  • ModFit
  • NovoExpress
  • Olympus OlyVIA
  • Qupath
  • SpectroFlo

Analyzer 5 Workstation (pcw-imp-193)

  • CaseViewer
  • CellSense
  • Ilastik
  • FIJI
  • Jetraw
  • MitoSegNet (MitoA)
  • Nutil
  • Olympus OlyVIA
  • QuickNII
  • ScanR Acquistion
  • ScanR Analysis
  • VisuAlign
  • ZEN Blue - advanced processing tools and Airyscan, Developer Toolkit, 2D Toolkit

Analyzer 6 Workstation (pcw-imp-293)

  • CaseViewer
  • FIJI
  • Ilastik
  • Jetraw
  • Olympus OlyVIA
  • QuickNII
  • Nutil
  • SymPhoTime 64
  • VisuAlign
  • ZEN Black - Base
  • ZEN Blue - Physiology, Developer Toolkit, Airyscan, 2D-Toolkit

GPU server 1 (biooptics-gpu-1.vbc.ac.at)

Arivis Vision 4D
Aivia
Anaconda
CellProfiler
FIJI
Huygens
Imaris File Converter
Jetraw
Napari
Olympus OlyVIA
ZEN Blue - Airyscan, Developer Toolkit, 2D-Toolkit, AI Toolkit, BioApps

GPU server 2 (biooptics-gpu-2.vbc.ac.at)

FIJI
Huygens
Jetraw
Napari
Stitchy
ZEN Black - 3D Lightsheet
ZEN Blue - 3D Lightsheet

Hive (hive-2.imp.univie.ac.at)

For information on how to use Hive storage & processing please check the information on the Intranet.

Hive-1 Imaris
Imaris
Imaris File Converter
Imaris Stitcher
Imaris Viewer
Jetraw

Hive-2 Huygens
Huygens
Jetraw

Hive-3 ZEN Blue
Jetraw
ZEN Blue

Hive-4
Jetraw

Hive-5
Jetraw

Virtual machines for FlowJo V10 and ForeCyt

flowjo-1.imp.ac.at  - FlowJo, ForeCyt
flowjo-2.imp.ac.at  - FlowJo, ForeCyt
flowjo-3.imp.ac.at  - FlowJo, ForeCyt
flowjo-4.imp.ac.at  - FlowJo, ForeCyt
flowjo-5.imp.ac.at  - FlowJo, NovoExpress

Plugins available on all FlowJo installations: ClusterExplorer, DiVaTranslator, DownSample, FlowAI, FlowClean, FlowSOM, Hyperfinder, IndexSort, Phenograph

For additional Plugins - please contact BioOptics staff

How to connect remotely - pdf

How to setup a VNC connection - pdf

How to register for Flow Jo (Cloud license) - pdf