Workstations
Workstations
Usage rights of the workstations must be requested via the PPMS Booking System ("request training").
It is necessary to always book a slot in PPMS, it is not possible to use the workstation without reservation - PPMS will not allow to log-in.
Sign-Up is on a first come, first serve basis.
Please mind that most user work on the workstations remotely, so never try to log into Windows without reservation, as this will terminate their work!
Analyzer 1 Workstation (pcw-imba-116)
- Advanced renamer
- Amira (connect via VNC - see Protocols)
- CaseViewer
- FIJI
- Imaris
- Imaris File Converter
- Imaris Stitcher
- Imaris Viewer
- Jetraw
- Leica LAS X
- Olympus OlyVIA
- picasso
- ZEN Black - Elyra package (PALM, SIM, SIM2)
- ZEN Blue - Molecular quantification toolkit (PALM, SIM, SIM2)
Analyzer 2 Workstation (pcw-imba-132)
- Advanced renamer
- Case Viewer
- FIJI
- Ilastik
- Imaris File Converter
- Imaris Viewer
- Jetraw
- Leica LAS X
- Living Image
- Olympus OlyVIA
- picasso
- ZEN Black - Base
- ZEN Blue - Airyscan, Image Analysis, Developer Toolkit
Analyzer 3 Workstation (pcw-imba-229)
- CaseViewer
- CellProfiler
- FACSDiva (connect via VNC - see Protocols)
- FIJI
- FlowJo (see below available Plugins)
- Ilastik
- Jetraw
- Living Image
- Nutil
- Olympus OlyVIA
- QuickNII
- RStudio
- Spectroflo
- VisuAlign
- ZEN Blue - Base
- 3DSlicer
Analyzer 4 Workstation (pcw-imba-230)
- CaseViewer - with Marker Option
- FACSDiva (connect via VNC - see Protocols)
- FIJI
- Ilastik
- Jetraw
- ModFit
- NovoExpress
- Olympus OlyVIA
- Qupath
- SpectroFlo
Analyzer 5 Workstation (pcw-imp-193)
- CaseViewer
- CellSense
- Ilastik
- Jetraw
- MitoSegNet (MitoA)
- Nutil
- Olympus OlyVIA
- QuickNII
- ScanR Acquistion
- ScanR Analysis
- VisuAlign
- ZEN Blue - advanced processing tools and Airyscan, Developer Toolkit, 2D Toolkit
Analyzer 6 Workstation (pcw-imp-293)
- CaseViewer
- Ilastik
- Jetraw
- Olympus OlyVIA
- QuickNII
- Nutil
- SymPhoTime 64
- VisuAlign
- ZEN Black - Base
- ZEN Blue - Physiology, Developer Toolkit, Airyscan, 2D-Toolkit
GPU server 1 (biooptics-gpu-1.vbc.ac.at)
Arivis Vision 4D
Aivia
Anaconda
CellProfiler
FIJI
Imaris File Converter
etraw
Napari
Olympus OlyVIA
ZEN Blue - Airyscan, Developer Toolkit, 2D-Toolkit, AI Toolkit, BioApps
GPU server 2 (biooptics-gpu-2.vbc.ac.at)
FIJI
Huygens
Jetraw
Napari
Stitchy
ZEN Black - 3D Lightsheet
ZEN Blue - 3D Lightsheet
Hive (hive-2.imp.univie.ac.at)
For information on how to use Hive storage & processing please check the information on the Intranet.
Hive-1 Imaris
Imaris
Imaris File Converter
Imaris Stitcher
Imaris Viewer
Jetraw
Hive-2 Huygens
Huygens
Jetraw
Hive-3 ZEN Blue
Jetraw
ZEN Blue
Hive-4
Jetraw
Hive-5
Jetraw
Virtual machines for FlowJo V10 and ForeCyt
flowjo-1.imp.ac.at - FlowJo, ForeCyt
flowjo-2.imp.ac.at - FlowJo, ForeCyt
flowjo-3.imp.ac.at - FlowJo, ForeCyt
flowjo-4.imp.ac.at - FlowJo, ForeCyt
flowjo-5.imp.ac.at - FlowJo, NovoCyte Express
Plugins available on all FlowJo installations: ClusterExplorer, DiVaTranslator, DownSample, FlowAI, FlowClean, FlowSOM, Hyperfinder, IndexSort, Phenograph
For additional Plugins - please contact BioOptics staff
How to connect remotely - pdf
How to setup a VNC connection - pdf
How to register for Flow Jo (Cloud license) - pdf