Publications

2020

 

Steffen Dietzel, Elisa Ferrando‐May, Hans Fried, Christian Kukat, Angela Naumann, Roland Nitschke, Pawel Pasierbek, Jan Peychl, Tobias Manuel Rasse, Britta Schroth‐Diez, Martin Thomas Stöckl, Stefan Terjung, Roland Thuenauer, Silke Tulok, Stefanie Weidtkamp‐Peters , German BioImaging‐Society for Microscopy and Image Analysis A joint action in times of pandemic: the German BioImaging recommendations for operating imaging core facilities during the SARS‐Cov ‐2 emergency Cytometry A First published: 24 June 2020 https://doi.org/10.1002/cyto.a.24178

 

Marko Pende, Karim Vadiwala, Hannah Schmidbaur, Alexander W. Stockinger, Prayag Murawala Saiedeh Saghafi, Marcus P. S. Dekens, Klaus Becker, Roger Revilla-i-Domingo, Sofia-Christina Papadopoulos, Martin Zurl, Pawel Pasierbek, Oleg Simakov, Elly M. Tanaka, Florian Raible, Hans-Ulrich Dodt

A versatile depigmentation, clearing, and labeling method for exploring nervous system diversity

Science Advances  29 May 2020:Vol. 6, no. 22, eaba0365 DOI: 10.1126/sciadv.aba0365

 

Martin Colombini, Pawel Pasierbek, Wouter Masselink

A safe and reusable imaging chamber compatible with organic solvents Microscopy, dfaa020, https://doi.org/10.1093/jmicro/dfaa020 Published 25 April 2020

imaging chamber

2019

Wouter Masselink, Daniel Reumann, Prayag Murawala, Pawel Pasierbek, Yuka Taniguchi, François Bonnay, Katharina Meixner, Jürgen A. Knoblich, Elly M. Tanaka: Broad applicability of a streamlined Ethyl Cinnamate-based clearing procedure  Development 2019 : dev.166884 doi: 10.1242/dev.166884 Published 21 January 2019 http://dev.biologists.org/content/early/2019/01/18/dev.166884

2018

Pliota P, Böhm V, Grössl F, Griessner J, Valenti O, Kraitsy K, Kaczanowska J, Pasieka M, Lendl T, Deussing JM, Haubensak W. Stress peptides sensitize fear circuitry to promote passive coping. Mol Psychiatry. 2018 Jun 14. doi: 10.1038/s41380-018-0089-2. [Epub ahead of print] PMID:29904149

 

Wouter Masselink, Daniel Reumann, Prayag Murawala, Pawel Pasierbek, Yuka Taniguchi, Juergen A Knoblich, Elly M Tanaka Broad applicability of a streamlined Ethyl Cinnamate-based clearing procedure bioRxiv 346247; doi: https://doi.org/10.1101/346247

2017

Barbez E, Dünser K, Gaidora A, Lendl T, Busch W. Auxin steers root cell expansion via apoplastic pH regulation in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2017 Jun 13;114(24):E4884-E4893. doi: 10.1073/pnas.1613499114. Epub 2017 May 30. PMID: 28559333

 

Kral M, Klimek C, Kutay B, Timelthaler G, Lendl T, Neuditschko B, Gerner C, Sibilia M, Csiszar A Covalent dimerization of interleukin-like epithelial-to-mesenchymal transition (EMT) inducer (ILEI) facilitates EMT, invasion, and late aspects of metastasis. FEBS J. 2017 Oct;284(20):3484-3505. doi: 10.1111/febs.14207. Epub 2017 Sep 14. PMID:28837266

 

Rao S, Sigl V, Wimmer RA, Novatchkova M, Jais A, Wagner G, Handschuh S, Uribesalgo I, Hagelkruys A, Kozieradzki I, Tortola L, Nitsch R, Cronin SJ, Orthofer M, Branstetter D, Canon J, Rossi J, D'Arcangelo M, Botling J, Micke P, Fleur L, Edlund K, Bergqvist M, Ekman S, Lendl T, Popper H, Takayanagi H, Kenner L, Hirsch FR, Dougall W, Penninger JM. RANK rewires energy homeostasis in lung cancer cells and drives primary lung cancer. Genes Dev. 2017 Oct 15;31(20):2099-2112. doi: 10.1101/gad.304162.117. Epub 2017 Nov 8. PMID: 29118048

2015

 

Christine Mieck, Maxim I Molodtsov, Katarzyna Drzewicka, Babet van der Vaart, Gabriele Litos, Gerald Schmauss, Alipasha Vaziri, Stefan Westermann.Non-catalytic motor domains enable processive movement and functional diversification of the kinesin-14 Kar3 eLife. 2015 Jan doi: http://dx.doi.org/10.7554/eLife.04489

2014

Veronika A Herzog, Adelheid Lempradl, Johanna Trupke, Helena Okulski, Christina Altmutter, Frank Ruge, Bernd Boidol, Stefan Kubicek, Gerald Schmauss, Karin Aumayr, Marius Ruf, Andrew Pospisilik, Andrew Dimond, Hasene Basak Senergin, Marcus L Vargas, Jeffrey A Simon & Leonie Ringrose. A strand-specific switch in noncoding transcription switches the function of a Polycomb/Trithorax response element. Nature Genetics 2014 August 10 doi:10.1038/ng.3058

Rao S, Tortola L, Perlot T, Wirnsberger G, Novatchkova M, Nitsch R, Sykacek P, Frank L, Schramek D, Komnenovic V, Sigl V, Aumayr K, Schmauss G, Fellner N, Handschuh S, Glösmann M, Pasierbek P, Schlederer M, Resch GP, Ma Y, Yang H, Popper H, Kenner L, Kroemer G, Penninger JM. A dual role for autophagy in a murine model of lung cancer. Nat Commun. 2014 Jan 20;5:3056. doi: 10.1038/ncomms4056.
http://www.nature.com/ncomms/2014/140120/ncomms4056/full/ncomms4056.html

 Csiszar A, Kutay B, Wirth S, Schmidt U, Macho-Maschler S, Schreiber M, Alacakaptan M, Vogel GF, Aumayr K, Huber LA, Beug H. Interleukin-like epithelial-to-mesenchymal transition inducer activity is controlled by proteolytic processing and plasminogen-urokinase plasminogen activator receptor system-regulated secretion during breast cancer progression. Breast Cancer Res. 2014 Sep 9;16(5):433. doi: 10.1186/s13058-014-0433-7. PMID: 25212966

 

 

2013

Schrödel T, Prevedel R, Aumayr K, Zimmer M, Vaziri A. Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light. Nat Methods. 2013 Oct;10(10):1013-20. doi: 10.1038/nmeth.2637. Epub 2013 Sep 8. http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2637.html

Harzer H, Berger C, Conder R, Schmauss G, Knoblich JA (2013). FACS purification of Drosophila larval neuroblasts for next-generation sequencing. Nat Protoc. 2013 Jun;8(6):1088-99. (http://www.ncbi.nlm.nih.gov/pubmed/22323443)

Homem CCF, Reichardt I, Berger C, Lendl T, Knoblich JA (2013) Long-Term Live Cell Imaging and Automated 4D Analysis of Drosophila Neuroblast Lineages.PLoS ONE 8(11): e79588. doi:10.1371/journal.pone.0079588 (http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0079588)

2012

Latos PA, Pauler FM, Koerner MV, Şenergin HB, Hudson QJ, Stocsits RR, Allhoff W, Stricker SH, Klement RM, Warczok KE, Aumayr K, Pasierbek P, Barlow DP (2012). Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing. Science. 2012 Dec 14;338(6113):1469-72. (http://www.ncbi.nlm.nih.gov/pubmed/23239737)

Adlassnig W, Koller-Peroutka M, Bauer S, Koshkin E, Lendl T, Lichtscheidl IK (2012) Endocytotic uptake of nutrients in carnivorous plants. Plant J. 2012 Jul;71(2):303-13. (http://www.ncbi.nlm.nih.gov/pubmed/22417315)

Kovacic B, Hoelbl A, Litos G, Alacakaptan M, Schuster C, Fischhuber KM, Kerenyi MA, Stengl G, Moriggl R, Sexl V, Beug H (2012). Diverging fates of cells of origin in acute and chronic leukaemia. EMBO Mol Med. 2012 Apr;4(4):283-97 (http://www.ncbi.nlm.nih.gov/pubmed/22323443)

Müller T, Schumann C, Kraegeloh A (2012). STED microscopy and its applications: new insights into cellular processes on the nanoscale. Chemphyschem. 2012 Jun 4;13(8):1986-2000. (http://www.ncbi.nlm.nih.gov/pubmed/?term=m%C3%BCller+t+kraegeloh)

Harzer H, Berger C, Conder R, Schmauss G, Knoblich JA (2013). FACS purification of Drosophila larval neuroblasts for next-generation sequencing. Nat Protoc. 2013 Jun;8(6):1088-99. (http://www.ncbi.nlm.nih.gov/pubmed/22323443)

2011

Elling U, Taubenschmid J, Wirnsberger G, O'Malley R, Demers SP, Vanhaelen Q, Shukalyuk AI, Schmauss G, Schramek D, Schnuetgen F, von Melchner H, Ecker JR, Stanford WL, Zuber J, Stark A, Penninger JM (2011). Forward and reverse genetics through derivation of haploid mouse embryonic stem cells. Cell Stem Cell. 2011 Dec 2;9(6):563-74. (abstract)

Adlassnig W, Peroutka M, Lendl T (2011). Traps of carnivorous pitcher plants as a habitat: composition of the fluid, biodiversity and mutualistic activities. Ann Bot. 2011 Feb;107(2):181-94. (http://www.ncbi.nlm.nih.gov/pubmed/21159782)

2010

Baudrimont A, Penkner A, Woglar A, Machacek T, Wegrostek C, Gloggnitzer J, Fridkin A, Klein F, Gruenbaum Y, Pasierbek P, Jantsch V. (2010). Leptotene/zygotene chromosome movement via the SUN/KASH protein bridge in Caenorhabditis elegans. PLoS Genet. 6(11):e1001219.  (abstract)

Baumann CL, Aspalter IM, Sharif O, Pichlmair A, Blüml S, Grebien F, Bruckner M, Pasierbek P, Aumayr K, Planyavsky M, Bennett KL, Colinge J, Knapp S, Superti-Furga G. (2010). CD14 is a coreceptor of Toll-like receptors 7 and 9.J Exp Med. 207(12):2689-701. (abstract)

Hoelbl, A., Schuster, C., Kovacic, B., Zhu, B., Wickre, M., Hoelzl, MA., Fajmann, S., Grebien, F., Warsch, W., Stengl, G., Hennighausen, L., Poli, V., Beug, H., Moriggl, R., Sexl, V. (2010). Stat5 is indispensable for the maintenance of bcr/abl-positive leukaemia. EMBO Mol Med. 2(3):98-110  (abstract)

Pospisilik, JA., Schramek, D., Schnidar, H., Cronin, SJ., Nehme, NT., Zhang, X., Knauf, C., Cani, PD., Aumayr, K., Todoric, J., Bayer, M., Haschemi, A., Puviindran, V., Tar, K., Orthofer, M., Neely, GG., Dietzl, G., Manoukian, A., Funovics, M., Prager, G., Wagner, O., Ferrandon, D., Aberger, F., Hui, CC., Esterbauer, H., Penninger, JM. (2010). Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate. Cell. 140(1):148-60  (abstract)

2009

Fritz, J., Strehblow, A., Taschner, A., Schopoff, S., Pasierbek, P., Jantsch, MF. (2009). RNA-regulated interaction of transportin-1 and exportin-5 with the double-stranded RNA-binding domain regulates nucleocytoplasmic shuttling of ADAR1. Mol Cell Biol. 29(6):1487-97  (abstract)

Penkner, AM., Fridkin, A., Gloggnitzer, J., Baudrimont, A., Machacek, T., Woglar, A., Csaszar, E., Pasierbek, P., Ammerer, G., Gruenbaum, Y., Jantsch, V. (2009). Meiotic chromosome homology search involves modifications of the nuclear envelope protein Matefin/SUN-1. Cell. 139(5):920-33  (abstract)

Stockinger S, Kastner R, Kernbauer E, Pilz A, Westermayer S, Reutterer B, Soulat D, Stengl G, Vogl C, Frenz T, Waibler Z, Taniguchi T, Rülicke T, Kalinke U, Müller M, Decker T. (2009). Characterization of the interferon-producing cell in mice infected with Listeria monocytogenes. PLoS Pathog. 5(3):e1000355. (abstract)

2007

 

Bakiri, L., Takada, Y., Radolf, M., Eferl, R., Yaniv, M., Wagner, EF., Matsuo, K. (2007). Role of heterodimerization of c-Fos and Fra1 proteins in osteoclast differentiation. Bone. 40(4):867-75 (abstract)
 
Bakker, WJ., van Dijk, TB., Parren-van Amelsvoort, M., Kolbus, A., Yamamoto, K., Steinlein, P., Verhaak, RG., Mak, TW., Beug, H., Löwenberg, B., von Lindern, M. (2007). Differential regulation of Foxo3a target genes in erythropoiesis. Mol Cell Biol. 27(10):3839-3854 (
abstract)
 
Jantsch, V., Tang, L., Pasierbek, P., Penkner, A., Nayak, S., Baudrimont, A., Schedl, T., Gartner, A., Loidl, J. (2007). Caenorhabditis elegans prom-1 is required for meiotic prophase progression and homologous chromosome pairing. Mol Biol Cell. 18(12):4911-20 (
abstract)
 
Regha, K., Sloane, MA., Huang, R., Pauler, FM., Warczok, KE., Melikant, B., Radolf, M., Martens, JH., Schotta, G., Jenuwein, T., Barlow, DP. (2007). Active and repressive chromatin are interspersed without spreading in an imprinted gene cluster in the mammalian genome. Mol Cell. 27(3):353-66 (
abstract)

2005

 

Bouchard, M., Grote, D., Craven, SE., Sun, Q., Steinlein, P., Busslinger, M. (2005). Identification of Pax2-regulated genes by expression profiling of the mid-hindbrain organizer region. Development. 132(11):2633-43 (abstract)
 
Drissen, R., von Lindern, M., Kolbus, A., Driegen, S., Steinlein, P., Beug, H., Grosveld, F., Philipsen, S. (2005).
The erythroid phenotype of EKLF-null mice: defects in hemoglobin metabolism and membrane stability. Mol Cell Biol. 25(12):5205-14 (abstract)
 
Gillardon, F., Steinlein, P., Bürger, E., Hildebrandt, T., Gerner, C. (2005).
Phosphoproteome and transcriptome analysis of the neuronal response to a CDK5 inhibitor. Proteomics. 5(5):1299-307 (abstract)
 
Leksa, V., Godar, S., Schiller, HB., Fuertbauer, E., Muhammad, A., Slezakova, K., Horejsi, V., Steinlein, P., Weidle, UH., Binder, BR., Stockinger, H. (2005). TGF-beta-induced apoptosis in endothelial cells mediated by M6P/IGFII-R and mini-plasminogen. J Cell Sci. 118(Pt 19):4577-86 (
abstract)
 
Martens, JH., O\'Sullivan, RJ., Braunschweig, U., Opravil, S., Radolf, M., Steinlein, P., Jenuwein, T. (2005). The profile of repeat-associated histone lysine methylation states in the mouse epigenome.
EMBO J. 24(4):800-12 (abstract)
 
Pilat, S., Carotta, S., Schiedlmeier, B., Kamino, K., Mairhofer, A., Will, E., Modlich, U., Steinlein, P., Ostertag, W., Baum, C., Beug, H., Klump, H. (2005).
HOXB4 enforces equivalent fates of ES-cell-derived and adult hematopoietic cells. Proc Natl Acad Sci U S A. 102(34):12101-6 (abstract)

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2004

 

Amatschek, S., Koenig, U., Auer, H., Steinlein, P., Pacher, M., Gruenfelder, A., Dekan, G., Vogl, S., Kubista, E., Heider, KH., Stratowa, C., Schreiber, M., Sommergruber, W. (2004). Tissue-wide expression profiling using cDNA subtraction and microarrays to identify tumor-specific genes. Cancer Res. 64(3):844-56 (abstract)
 
Bakker, WJ., Blázquez-Domingo, M., Kolbus, A., Besooyen, J., Steinlein, P., Beug, H., Coffer, PJ., Löwenberg, B., von Lindern, M., van Dijk, TB. (2004). FoxO3a regulates erythroid differentiation and induces BTG1, an activator of protein arginine methyl transferase 1.
J Cell Biol. 164(2):175-84 (abstract)
 
Carotta, S., Pilat, S., Mairhofer, A., Schmidt, U., Dolznig, H., Steinlein, P., Beug, H. (2004).
Directed differentiation and mass cultivation of pure erythroid progenitors from mouse embryonic stem cells. Blood. 104(6):1873-80 (abstract)
 
Jantsch, V., Pasierbek, P., Mueller, MM., Schweizer, D., Jantsch, M., Loidl, J. (2004).
Targeted gene knockout reveals a role in meiotic recombination for ZHP-3, a Zip3-related protein in Caenorhabditis elegans. Mol Cell Biol. 24(18):7998-8006 (abstract)
 
Klucky, B., Koch, B., Radolf, M., Steinlein, P., Wintersberger, E. (2004). Polyomavirus tumorantigens have a profound effect on gene expression in mouse fibroblasts.
Oncogene. 23(27):4707-21 (abstract)
 
Tschachler, E., Reinisch, CM., Mayer, C., Paiha, K., Lassmann, H., Weninger, W. (2004).
Sheet preparations expose the dermal nerve plexus of human skin and render the dermal nerve end organ accessible to extensive analysis. J Invest Dermatol. 122(1):177-82 (abstract)

2003

 

Herceg, Z., Li, H., Cuenin, C., Shukla, V., Radolf, M., Steinlein, P., Wang, ZQ. (2003). Genome-wide analysis of gene expression regulated by the HAT cofactor Trrap in conditional knockout cells. Nucleic Acids Res. 31(23):7011-23 (abstract)
 
Kolbus, A., Blázquez-Domingo, M., Carotta, S., Bakker, W., Luedemann, S., von Lindern, M., Steinlein, P., Beug, H. (2003).
Cooperative signaling between cytokine receptors and the glucocorticoid receptor in the expansion of erythroid progenitors: molecular analysis by expression profiling. Blood. 102(9):3136-46 (abstract)
 
Rohde, HM., Cheong, FY., Konrad, G., Paiha, K., Mayinger, P., Boehmelt, G. (2003). The human phosphatidylinositol phosphatase SAC1 interacts with the coatomer I complex.
J Biol Chem. 278(52):52689-99 (abstract)
 
Schlingemann, J., Hess, J., Wrobel, G., Breitenbach, U., Gebhardt, C., Steinlein, P., Kramer, H., Fürstenberger, G., Hahn, M., Angel, P., Lichter, P. (2003).
Profile of gene expression induced by the tumour promotor TPA in murine epithelial cells. Int J Cancer. 104(6):699-708 (abstract)
 
Schneeberger, A., Lührs, P., Kutil, R., Steinlein, P., Schild, H., Schmidt, W., Stengl, G. (2003).
Granulocyte-macrophage colony-stimulating factor-based melanoma cell vaccines immunize syngeneic and allogeneic recipients via host dendritic cells. J Immunol. 171(10):5180-7 (abstract)
 
Wick, N., Thurner, S., Paiha, K., Sedivy, R., Vietor, I., Huber, LA. (2003). Quantitative measurement of cell migration using time-lapse videomicroscopy and non-linear system analysis. Histochem Cell Biol. 119(1):15-20 (
abstract)